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Wash the mushrooms and pat dry with paper towels. Remove the stems and set aside (they can be minced and added to the sausage mixture later is desired).
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Preheat oven to 350.
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Cook and crumble the sausage in a large skillet until done, drain, and place in a mixing bowl. Add the cream cheese, jack cheese, crushed red pepper flakes and minced stems if desired. Mix well.
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Place 1 heaping teaspoon of the mixture into each mushroom cap.
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Place the stuffed mushroom caps on a rimmed baking pan, sprinkle with Parmesan, and bake for 20 minutes.
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Remove from oven and let cool for 5 minutes.
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Serve stuffed mushrooms on a decorative serving platter.